API¶
Modules¶
- scripts.synteny package
- scripts.synteny.duplicated_families module
- scripts.synteny.f1_score_optimization module
- scripts.synteny.filter_no_synteny_genes module
- scripts.synteny.filter_regions module
- scripts.synteny.missed_orthologies module
- scripts.synteny.mygenome module
- scripts.synteny.pairwise_orthology_synteny module
- scripts.synteny.syntenycompare module
- scripts.synteny.utilities module
- scripts.trees package
- scripts.trees.build_treebest_trees module
- scripts.trees.convert_ids module
- scripts.trees.cut_subtrees module
- scripts.trees.genetree module
- scripts.trees.inconsistent_trees module
- scripts.trees.iteration_nhx_tags module
- scripts.trees.make_tree_images module
- scripts.trees.merge_subtrees module
- scripts.trees.orthologs module
- scripts.trees.parse_au_test module
- scripts.trees.regraft_subtrees module
- scripts.trees.speciestree module
- scripts.trees.utilities module
- scripts.graphs package
- scripts.lorelei package